Introduction to Computational Biology
This project is maintained by EDS@UGA
Lecture and assignment schedules are subject to change without notice, because reasons.
Lectures are Tues & Thurs, 9:30 - 10:45am at Biological Sciences, Room 404A.
Live mybinder integration with the published lecture material can be accessed here (may take several minutes to load if an image needs to be built).
Final exam will be Thursday, December 6, from 8:00 - 11:00am in Science Learning Center Room 145.
| Date | Topic | Links |
|---|---|---|
| 8/14 | Course Introduction and pre-test | html pdf ipynb pretest |
| 8/16 | The command line | html pdf ipynb |
| 8/16 | Assignment 1 Released | |
| 8/21 | Python syntax, variables, and operators | html pdf ipynb |
| 8/23 | Conditionals, loops, data structures | html pdf ipynb |
| 8/28 | Guest Lecture: Dr. Zhuofei Hou | pptx pdf |
| 8/30 | numpy, modules, file I/O | html pdf ipynb |
| 8/30 | Assignment 1 Due 11:59pm ; Assignment 2 Released | |
| 9/4 | Molecular biology primer | html pdf ipynb |
| 9/6 | Sequence alignment | html pdf ipynb |
| 9/11 | Functions | html pdf ipynb |
| 9/13 | Guest Lecture: Dr. Bodo Linz | pptx pdf |
| 9/13 | Assignment 2 Due 11:59pm ; Assignment 3 Released | |
| 9/18 | Dynamic programming | html pdf ipynb |
| 9/20 | Introduction to probability | html pdf ipynb |
| 9/25 | Guest Lecture: Dr. Bodo Linz | pptx pdf |
| 9/27 | Hidden Markov models | html pdf ipynb |
| 9/27 | Assignment 3 Due 11:59pm | |
| 10/2 | MIDTERM LAB | |
| 10/4 | Midterm post-mortem review | |
| 10/4 | Assignment 4 Released | |
| 10/9 | Computational modeling | html pdf ipynb |
| 10/11 | CANCELED due to Hurricane Michael | |
| 10/16 | Visualization with matplotlib | html pdf ipynb |
| 10/18 | Structural biology | html pdf ipynb |
| 10/18 | Assignment 4 Due 11:59pm ; Assignment 5 Released | |
| 10/23 | Parameter estimation | html pdf ipynb |
| 10/25 | Structural analysis with with prody | html pdf ipynb |
| 10/26 | Final Project Proposals Due 11:59pm | html pdf ipynb |
| 10/30 | Introduction to computer vision | html pdf ipynb |
| 11/1 | Bioimaging I with scikit-image | html pdf ipynb |
| 11/1 | Assignment 5 Due 11:59pm ; Assignment 6 Released | |
| 11/6 | CANCELED - GO VOTE! | |
| 11/8 | Bioimaging II with opencv | html pdf ipynb |
| 11/13 | Clustering and machine learning with scikit-learn | html pdf ipynb |
| 11/15 | Open Science | html pdf ipynb |
| 11/15 | Assignment 6 Due 11:59pm | |
| 11/18 - 11/24 | Thanksgiving Break | |
| 11/27 | Final Project Presentations | |
| 11/29 | Final Project Presentations | |
| 12/6 | FINAL LAB | 8am-11am, SLC 145 |
| 12/6 | Final Project Deliverables Due 11:59pm | |